{"md5sum": "35409417dd00fbc74f52f36c4972e319", "status": "open", "dataset": "colo829bl", "filename": "GRCh38_to_DSA_COLO829BL_v1.0.0.chain", "software": [{"error": "no view permissions"}, {"error": "no view permissions"}], "accession": "SMASF32B11M2", "consortia": [{"uuid": "358aed10-9b9d-4e26-ab84-4bd162da182b", "@type": ["Consortium", "Item"], "display_title": "SMaHT", "status": "open", "@id": "/consortia/358aed10-9b9d-4e26-ab84-4bd162da182b/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "data_type": ["Chain File"], "file_sets": [{"display_title": "UWSC_FILE-SET_COLO829-BL_STD-ONT-R9_PS00342", "accession": "SMAFSHGOMYB3", "@id": "/file-sets/b3791a8f-4538-441f-97aa-a1c615fe63ed/", "@type": ["FileSet", "Item"], "status": "open", "uuid": "b3791a8f-4538-441f-97aa-a1c615fe63ed", "libraries": [{"display_title": "PS00342", "uuid": "92914ec4-6368-4c5b-8237-a9849459a707", "assay": {"category": "Bulk WGS", "display_title": "WGS", "uuid": "87fbe483-31c6-4ff7-8abd-043d185150af", "@type": ["Assay", "Item"], "status": "open", "@id": "/assays/87fbe483-31c6-4ff7-8abd-043d185150af/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "@type": ["Library", "Item"], "@id": "/libraries/92914ec4-6368-4c5b-8237-a9849459a707/", "status": "open", "analytes": [{"display_title": "UWSC_ANALYTE_COLO-829BL_HMWGDNA_1", "@type": ["Analyte", "Item"], "molecule": ["DNA"], "@id": "/analytes/3b93fe8e-f53d-4608-961f-fda7f03d373c/", "status": "open", "accession": "SMAAN4MYS3L8", "uuid": "3b93fe8e-f53d-4608-961f-fda7f03d373c", "samples": [{"uuid": "4ce8a6c8-fa0d-40d2-a5b1-957691ce30d0", "accession": "SMACUQMPNWIM", "@id": "/cell-culture-samples/4ce8a6c8-fa0d-40d2-a5b1-957691ce30d0/", "status": "open", "@type": ["CellCultureSample", "Sample", "Item"], "display_title": "UWSC_CELL-CULTURE-SAMPLE_COLO-829BL_4", "sample_sources": [{"display_title": "UWSC_CELL-CULTURE_COLO-829BL_1", "uuid": "8d7e3b2d-5086-4787-aa9d-91cbd13fbbea", "@type": ["CellCulture", "SampleSource", "Item"], "@id": "/cell-cultures/8d7e3b2d-5086-4787-aa9d-91cbd13fbbea/", "status": "open", "cell_line": [{"@id": "/cell-lines/41c6a99b-1236-4e31-bb19-938953105d37/", "status": "open", "display_title": "COLO 829BL", "@type": ["CellLine", "Item"], "code": "COLO829BL", "uuid": "41c6a99b-1236-4e31-bb19-938953105d37", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "sequencing": {"target_coverage": 40, "sequencer": {"@id": "/sequencers/36ed5823-9207-4514-8cc6-e9712deafb0a/", "@type": ["Sequencer", "Item"], "status": "open", "uuid": "36ed5823-9207-4514-8cc6-e9712deafb0a", "display_title": "ONT PromethION 24", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "status": "open", "@type": ["Sequencing", "Item"], "display_title": "UWSC_SEQUENCING_ONT-R9-300X", "uuid": "2fb504cb-93f5-486f-aa45-dd3a36145d90", "@id": "/Sequencing/2fb504cb-93f5-486f-aa45-dd3a36145d90/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_group": {"submission_center": "uwsc_gcc", "sample_source": "UWSC_CELL-CULTURE_COLO-829BL_1", "sequencing": "ont_promethion_24-Single-end-50000-R9", "assay": "bulk_wgs_pcr_free", "group_tag": ""}}, {"display_title": "UWSC_FILE-SET_COLO829-BL_STD-ONT-R10_PS00342", "accession": "SMAFSRBXFZ94", "@id": "/file-sets/923a1149-92c8-4ae7-806c-4a74f8517187/", "@type": ["FileSet", "Item"], "status": "open", "uuid": "923a1149-92c8-4ae7-806c-4a74f8517187", "libraries": [{"display_title": "PS00342", "uuid": "92914ec4-6368-4c5b-8237-a9849459a707", "assay": {"category": "Bulk WGS", "display_title": "WGS", "uuid": "87fbe483-31c6-4ff7-8abd-043d185150af", "@type": ["Assay", "Item"], "status": "open", "@id": "/assays/87fbe483-31c6-4ff7-8abd-043d185150af/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "@type": ["Library", "Item"], "@id": "/libraries/92914ec4-6368-4c5b-8237-a9849459a707/", "status": "open", "analytes": [{"display_title": "UWSC_ANALYTE_COLO-829BL_HMWGDNA_1", "@type": ["Analyte", "Item"], "molecule": ["DNA"], "@id": "/analytes/3b93fe8e-f53d-4608-961f-fda7f03d373c/", "status": "open", "accession": "SMAAN4MYS3L8", "uuid": "3b93fe8e-f53d-4608-961f-fda7f03d373c", "samples": [{"uuid": "4ce8a6c8-fa0d-40d2-a5b1-957691ce30d0", "accession": "SMACUQMPNWIM", "@id": "/cell-culture-samples/4ce8a6c8-fa0d-40d2-a5b1-957691ce30d0/", "status": "open", "@type": ["CellCultureSample", "Sample", "Item"], "display_title": "UWSC_CELL-CULTURE-SAMPLE_COLO-829BL_4", "sample_sources": [{"display_title": "UWSC_CELL-CULTURE_COLO-829BL_1", "uuid": "8d7e3b2d-5086-4787-aa9d-91cbd13fbbea", "@type": ["CellCulture", "SampleSource", "Item"], "@id": "/cell-cultures/8d7e3b2d-5086-4787-aa9d-91cbd13fbbea/", "status": "open", "cell_line": [{"@id": "/cell-lines/41c6a99b-1236-4e31-bb19-938953105d37/", "status": "open", "display_title": "COLO 829BL", "@type": ["CellLine", "Item"], "code": "COLO829BL", "uuid": "41c6a99b-1236-4e31-bb19-938953105d37", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "sequencing": {"target_coverage": 100, "sequencer": {"@id": "/sequencers/36ed5823-9207-4514-8cc6-e9712deafb0a/", "@type": ["Sequencer", "Item"], "status": "open", "uuid": "36ed5823-9207-4514-8cc6-e9712deafb0a", "display_title": "ONT PromethION 24", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "status": "open", "@type": ["Sequencing", "Item"], "display_title": "UWSC_SEQUENCING_ONT-R10-300X", "uuid": "038cf92c-f85f-430d-b903-3cabd4b3c92d", "@id": "/Sequencing/038cf92c-f85f-430d-b903-3cabd4b3c92d/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_group": {"submission_center": "uwsc_gcc", "sample_source": "UWSC_CELL-CULTURE_COLO-829BL_1", "sequencing": "ont_promethion_24-Single-end-50000-R10", "assay": "bulk_wgs_pcr_free", "group_tag": ""}}, {"display_title": "UWSC_FILE-SET_COLO829-BL_UL-ONT-R10_PS00339", "accession": "SMAFSWIMPOCS", "@id": "/file-sets/db65e9b7-034c-43db-85f5-35fe17af7544/", "@type": ["FileSet", "Item"], "status": "open", "uuid": "db65e9b7-034c-43db-85f5-35fe17af7544", "libraries": [{"display_title": "PS00339", "uuid": "4a315210-1f4e-4bd3-a631-44d8700c24ad", "assay": {"category": "Bulk WGS", "display_title": "Ultra-Long WGS", "uuid": "761d868f-f910-4790-a0c1-068f088b8ff7", "@type": ["Assay", "Item"], "status": "open", "@id": "/assays/761d868f-f910-4790-a0c1-068f088b8ff7/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "@type": ["Library", "Item"], "@id": "/libraries/4a315210-1f4e-4bd3-a631-44d8700c24ad/", "status": "open", "analytes": [{"display_title": "UWSC_ANALYTE_COLO-829BL_HMWGDNA_1", "@type": ["Analyte", "Item"], "molecule": ["DNA"], "@id": "/analytes/3b93fe8e-f53d-4608-961f-fda7f03d373c/", "status": "open", "accession": "SMAAN4MYS3L8", "uuid": "3b93fe8e-f53d-4608-961f-fda7f03d373c", "samples": [{"uuid": "4ce8a6c8-fa0d-40d2-a5b1-957691ce30d0", "accession": "SMACUQMPNWIM", "@id": "/cell-culture-samples/4ce8a6c8-fa0d-40d2-a5b1-957691ce30d0/", "status": "open", "@type": ["CellCultureSample", "Sample", "Item"], "display_title": "UWSC_CELL-CULTURE-SAMPLE_COLO-829BL_4", "sample_sources": [{"display_title": "UWSC_CELL-CULTURE_COLO-829BL_1", "uuid": "8d7e3b2d-5086-4787-aa9d-91cbd13fbbea", "@type": ["CellCulture", "SampleSource", "Item"], "@id": "/cell-cultures/8d7e3b2d-5086-4787-aa9d-91cbd13fbbea/", "status": "open", "cell_line": [{"@id": "/cell-lines/41c6a99b-1236-4e31-bb19-938953105d37/", "status": "open", "display_title": "COLO 829BL", "@type": ["CellLine", "Item"], "code": "COLO829BL", "uuid": "41c6a99b-1236-4e31-bb19-938953105d37", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "sequencing": {"target_coverage": 80, "sequencer": {"@id": "/sequencers/36ed5823-9207-4514-8cc6-e9712deafb0a/", "@type": ["Sequencer", "Item"], "status": "open", "uuid": "36ed5823-9207-4514-8cc6-e9712deafb0a", "display_title": "ONT PromethION 24", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "status": "open", "@type": ["Sequencing", "Item"], "display_title": "UWSC_SEQUENCING_UL-ONT-R10-300X", "uuid": "502b841e-5a95-4e6f-ad6b-def9e5130472", "@id": "/Sequencing/502b841e-5a95-4e6f-ad6b-def9e5130472/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_group": {"submission_center": "uwsc_gcc", "sample_source": "UWSC_CELL-CULTURE_COLO-829BL_1", "sequencing": "ont_promethion_24-Single-end-100000-R10", "assay": "bulk_ultralong_wgs", "group_tag": ""}}, {"display_title": "UWSC_FILE-SET_COLO-829BL_HI-C_1", "accession": "SMAFSE67ATNV", "@id": "/file-sets/3ee984ff-9f58-4e9e-8b5c-81dfcd1e3cb4/", "@type": ["FileSet", "Item"], "status": "open", "uuid": "3ee984ff-9f58-4e9e-8b5c-81dfcd1e3cb4", "libraries": [{"display_title": "PS00341", "uuid": "ccc36187-12bd-44fb-b351-10dac2459c56", "assay": {"category": "Hi-C", "display_title": "Hi-C", "uuid": "d9551013-ef50-4704-b7dd-375d468000ee", "@type": ["Assay", "Item"], "status": "open", "@id": "/assays/d9551013-ef50-4704-b7dd-375d468000ee/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "@type": ["Library", "Item"], "@id": "/libraries/ccc36187-12bd-44fb-b351-10dac2459c56/", "status": "open", "analytes": [{"display_title": "PS00341", "@type": ["Analyte", "Item"], "molecule": ["DNA"], "@id": "/analytes/2fa87ba9-811d-44eb-bb02-1c4ed82ee4dd/", "status": "open", "accession": "SMAANLHVT1T8", "uuid": "2fa87ba9-811d-44eb-bb02-1c4ed82ee4dd", "samples": [{"uuid": "7ed3cc3f-ada9-4f49-b898-b5a9c53aa0a9", "accession": "SMACUA8QEFU9", "@id": "/cell-culture-samples/7ed3cc3f-ada9-4f49-b898-b5a9c53aa0a9/", "status": "open", "@type": ["CellCultureSample", "Sample", "Item"], "display_title": "UWSC_CELL-CULTURE-SAMPLE_COLO-829BL_HI-C_1", "sample_sources": [{"display_title": "UWSC_CELL-CULTURE_COLO-829BL_1", "uuid": "8d7e3b2d-5086-4787-aa9d-91cbd13fbbea", "@type": ["CellCulture", "SampleSource", "Item"], "@id": "/cell-cultures/8d7e3b2d-5086-4787-aa9d-91cbd13fbbea/", "status": "open", "cell_line": [{"@id": "/cell-lines/41c6a99b-1236-4e31-bb19-938953105d37/", "status": "open", "display_title": "COLO 829BL", "@type": ["CellLine", "Item"], "code": "COLO829BL", "uuid": "41c6a99b-1236-4e31-bb19-938953105d37", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "sequencing": {"target_coverage": 60, "sequencer": {"@id": "/sequencers/c264052b-0c9f-4b0a-b919-ea1dc4f94d35/", "@type": ["Sequencer", "Item"], "status": "open", "uuid": "c264052b-0c9f-4b0a-b919-ea1dc4f94d35", "display_title": "Illumina NovaSeq 6000", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "status": "open", "@type": ["Sequencing", "Item"], "display_title": "UWSC_SEQUENCING_NOVASEQ6000-60X", "uuid": "5dbbf9f6-1aad-4969-9e7d-67ec02b64070", "@id": "/Sequencing/5dbbf9f6-1aad-4969-9e7d-67ec02b64070/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_group": {"submission_center": "uwsc_gcc", "sample_source": "UWSC_CELL-CULTURE_COLO-829BL_1", "sequencing": "illumina_novaseq_6000-Paired-end-150-no-flow-cell", "assay": "bulk_hic", "group_tag": ""}}, {"display_title": "UWSC_FILE-SET_COLO-829BL_FIBERSEQ_1", "accession": "SMAFSLTWXNP3", "@id": "/file-sets/c47e4516-b4ae-497f-9ee1-733cbd86a8c7/", "@type": ["FileSet", "Item"], "status": "open", "uuid": "c47e4516-b4ae-497f-9ee1-733cbd86a8c7", "libraries": [{"display_title": "PS00338", "uuid": "6d0647c4-21cd-4b92-a464-57860eb12355", "assay": {"category": "Bulk WGS", "display_title": "Fiber-seq", "uuid": "dec3e4cd-86cb-46cb-9ef7-62b1483c7ada", "@type": ["Assay", "Item"], "status": "open", "@id": "/assays/dec3e4cd-86cb-46cb-9ef7-62b1483c7ada/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "@type": ["Library", "Item"], "@id": "/libraries/6d0647c4-21cd-4b92-a464-57860eb12355/", "status": "open", "analytes": [{"display_title": "PS00338", "@type": ["Analyte", "Item"], "molecule": ["DNA"], "@id": "/analytes/57718c8a-58cc-4339-8d32-2314f76e7457/", "status": "open", "accession": "SMAANUNDNJRN", "uuid": "57718c8a-58cc-4339-8d32-2314f76e7457", "samples": [{"uuid": "87fa6309-c734-48ea-a7b9-b91873fb98ab", "accession": "SMACUBS146SV", "@id": "/cell-culture-samples/87fa6309-c734-48ea-a7b9-b91873fb98ab/", "status": "open", "@type": ["CellCultureSample", "Sample", "Item"], "display_title": "UWSC_CELL-CULTURE-SAMPLE_COLO-829BL_2", "sample_sources": [{"display_title": "UWSC_CELL-CULTURE_COLO-829BL_1", "uuid": "8d7e3b2d-5086-4787-aa9d-91cbd13fbbea", "@type": ["CellCulture", "SampleSource", "Item"], "@id": "/cell-cultures/8d7e3b2d-5086-4787-aa9d-91cbd13fbbea/", "status": "open", "cell_line": [{"@id": "/cell-lines/41c6a99b-1236-4e31-bb19-938953105d37/", "status": "open", "display_title": "COLO 829BL", "@type": ["CellLine", "Item"], "code": "COLO829BL", "uuid": "41c6a99b-1236-4e31-bb19-938953105d37", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "sequencing": {"target_coverage": 150.0, "sequencer": {"@id": "/sequencers/b88debe3-b07a-46c7-a1a1-78d2b0a0396b/", "@type": ["Sequencer", "Item"], "status": "open", "uuid": "b88debe3-b07a-46c7-a1a1-78d2b0a0396b", "display_title": "PacBio Revio", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "status": "open", "@type": ["Sequencing", "Item"], "display_title": "UWSC_SEQUENCING_PACBIO-HIFI-150X-24H", "uuid": "6cdb53f9-3878-408b-9319-72df4cbd67f0", "@id": "/Sequencing/6cdb53f9-3878-408b-9319-72df4cbd67f0/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_group": {"submission_center": "uwsc_gcc", "sample_source": "UWSC_CELL-CULTURE_COLO-829BL_1", "sequencing": "pacbio_revio_hifi-Single-end-20000-no-flow-cell", "assay": "bulk_fiberseq", "group_tag": ""}}], "file_size": 11293923, "description": "Coordinate conversion information from GRCh38 reference genome to the DSA_COLO829BL_v1.0.0", "file_format": {"@type": ["FileFormat", "Item"], "status": "open", "@id": "/file-formats/dd1ef82d-da5e-4680-bd5c-cf471a87eb5b/", "uuid": "dd1ef82d-da5e-4680-bd5c-cf471a87eb5b", "display_title": "chain", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "date_created": "2024-10-11T14:18:58.240036+00:00", "derived_from": [{"@id": "/supplementary-files/7caedc04-588b-49c4-b69a-18150c598edb/", "display_title": "SMHTCOLO829BL-X-X-M45-XX-uwsc-SMASFS7DNCQE-hifiasm_0.19.6_hapX.fa", "@type": ["SupplementaryFile", "SubmittedFile", "File", "Item"], "uuid": "7caedc04-588b-49c4-b69a-18150c598edb", "status": "open", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"@id": "/supplementary-files/e6555a47-79ae-4b00-9940-d718fddc02fd/", "display_title": "SMHTCOLO829BL-X-X-M45-XX-uwsc-SMASF5Z59KQ9-hifiasm_0.19.6_hapY.fa", "@type": ["SupplementaryFile", "SubmittedFile", "File", "Item"], "uuid": "e6555a47-79ae-4b00-9940-d718fddc02fd", "status": "open", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "submitted_by": {"error": "no view permissions"}, "submitted_id": "UWSC_SUPPLEMENTARY-FILE_GRCH38_TO_DSA_COLO829BL_V1.0.0.CHAIN", "access_status": "Open", "data_category": ["Reference Conversion"], "last_modified": {"modified_by": {"error": "no view permissions"}, "date_modified": "2025-10-08T02:34:11.267473+00:00"}, "content_md5sum": "35409417dd00fbc74f52f36c4972e319", "schema_version": "1", "source_assembly": "GRCh38", "target_assembly": "DSA_COLO829BL_v1.0.0", "submitted_md5sum": "35409417dd00fbc74f52f36c4972e319", "sequencing_center": {"@id": "/submission-centers/36a0af89-35a9-4fe1-9a8e-d6c5833b0b7d/", "status": "open", "uuid": "36a0af89-35a9-4fe1-9a8e-d6c5833b0b7d", "display_title": "UWSC GCC", "@type": ["SubmissionCenter", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "annotated_filename": "SMHTCOLO829BL-X-X-M45-XX-uwsc-SMASF32B11M2-GRCh38ToDSA.chain", "submission_centers": [{"@id": "/submission-centers/36a0af89-35a9-4fe1-9a8e-d6c5833b0b7d/", "@type": ["SubmissionCenter", "Item"], "display_title": "UWSC GCC", "uuid": "36a0af89-35a9-4fe1-9a8e-d6c5833b0b7d", "status": "open", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "s3_lifecycle_status": "standard", "donor_specific_assembly": {"error": "no view permissions"}, "override_release_tracker_description": "DSA", "@id": "/supplementary-files/1955da2d-1626-491c-ac11-ffcbf0c9f566/", "@type": ["SupplementaryFile", "SubmittedFile", "File", "Item"], "uuid": "1955da2d-1626-491c-ac11-ffcbf0c9f566", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "display_title": "SMHTCOLO829BL-X-X-M45-XX-uwsc-SMASF32B11M2-GRCh38ToDSA.chain", "href": "/supplementary-files/1955da2d-1626-491c-ac11-ffcbf0c9f566/@@download/SMASF32B11M2.chain.gz", "tsv_notes": "", "upload_key": "1955da2d-1626-491c-ac11-ffcbf0c9f566/SMASF32B11M2.chain", "file_access_status": "Open", "file_status_tracking": {"status_tracking": {"uploading": "2024-10-11T14:18:58.240036+00:00", "uploaded": "2024-10-14T22:06:04.086294+00:00", "released": "2024-10-17T19:37:31.705448+00:00", "open": "2025-10-08T02:34:11.267473+00:00", "released_date": "2024-10-17", "open_date": "2025-10-08"}, "release_dates": {"network_release": "2024-10-17T19:37:31.705448+00:00", "network_release_date": "2024-10-17", "public_release": "2025-10-08T02:34:11.267473+00:00", "public_release_date": "2025-10-08", "initial_release": "2024-10-17T19:37:31.705448+00:00", "initial_release_date": "2024-10-17"}}, "meta_workflow_run_inputs": [{"error": "no view permissions"}], "libraries": [{"uuid": "92914ec4-6368-4c5b-8237-a9849459a707", "status": "open", "@id": "/libraries/92914ec4-6368-4c5b-8237-a9849459a707/", "@type": ["Library", "Item"], "display_title": "PS00342", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"uuid": "4a315210-1f4e-4bd3-a631-44d8700c24ad", "status": "open", "@id": "/libraries/4a315210-1f4e-4bd3-a631-44d8700c24ad/", "@type": ["Library", "Item"], "display_title": "PS00339", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"uuid": "ccc36187-12bd-44fb-b351-10dac2459c56", "status": "open", "@id": "/libraries/ccc36187-12bd-44fb-b351-10dac2459c56/", "@type": ["Library", "Item"], "display_title": "PS00341", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"uuid": "6d0647c4-21cd-4b92-a464-57860eb12355", "status": "open", "@id": "/libraries/6d0647c4-21cd-4b92-a464-57860eb12355/", "@type": ["Library", "Item"], "display_title": "PS00338", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "sequencing": [{"uuid": "2fb504cb-93f5-486f-aa45-dd3a36145d90", "@id": "/Sequencing/2fb504cb-93f5-486f-aa45-dd3a36145d90/", "status": "open", "@type": ["Sequencing", "Item"], "display_title": "UWSC_SEQUENCING_ONT-R9-300X", "sequencer": {"@type": ["Sequencer", "Item"], "display_title": "ONT PromethION 24", "status": "open", "@id": "/sequencers/36ed5823-9207-4514-8cc6-e9712deafb0a/", "platform": "ONT", "uuid": "36ed5823-9207-4514-8cc6-e9712deafb0a", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"uuid": "038cf92c-f85f-430d-b903-3cabd4b3c92d", "@id": "/Sequencing/038cf92c-f85f-430d-b903-3cabd4b3c92d/", "status": "open", "@type": ["Sequencing", "Item"], "display_title": "UWSC_SEQUENCING_ONT-R10-300X", "sequencer": {"@type": ["Sequencer", "Item"], "display_title": "ONT PromethION 24", "status": "open", "@id": "/sequencers/36ed5823-9207-4514-8cc6-e9712deafb0a/", "platform": "ONT", "uuid": "36ed5823-9207-4514-8cc6-e9712deafb0a", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"uuid": "502b841e-5a95-4e6f-ad6b-def9e5130472", "@id": "/Sequencing/502b841e-5a95-4e6f-ad6b-def9e5130472/", "status": "open", "@type": ["Sequencing", "Item"], "display_title": "UWSC_SEQUENCING_UL-ONT-R10-300X", "sequencer": {"@type": ["Sequencer", "Item"], "display_title": "ONT PromethION 24", "status": "open", "@id": "/sequencers/36ed5823-9207-4514-8cc6-e9712deafb0a/", "platform": "ONT", "uuid": "36ed5823-9207-4514-8cc6-e9712deafb0a", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"uuid": "5dbbf9f6-1aad-4969-9e7d-67ec02b64070", "@id": "/Sequencing/5dbbf9f6-1aad-4969-9e7d-67ec02b64070/", "status": "open", "@type": ["Sequencing", "Item"], "display_title": "UWSC_SEQUENCING_NOVASEQ6000-60X", "sequencer": {"@type": ["Sequencer", "Item"], "display_title": "Illumina NovaSeq 6000", "status": "open", "@id": "/sequencers/c264052b-0c9f-4b0a-b919-ea1dc4f94d35/", "platform": "Illumina", "uuid": "c264052b-0c9f-4b0a-b919-ea1dc4f94d35", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"uuid": "6cdb53f9-3878-408b-9319-72df4cbd67f0", "@id": "/Sequencing/6cdb53f9-3878-408b-9319-72df4cbd67f0/", "status": "open", "@type": ["Sequencing", "Item"], "display_title": "UWSC_SEQUENCING_PACBIO-HIFI-150X-24H", "sequencer": {"@type": ["Sequencer", "Item"], "display_title": "PacBio Revio", "status": "open", "@id": "/sequencers/b88debe3-b07a-46c7-a1a1-78d2b0a0396b/", "platform": "PacBio", "uuid": "b88debe3-b07a-46c7-a1a1-78d2b0a0396b", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "assays": [{"@type": ["Assay", "Item"], "status": "open", "uuid": "87fbe483-31c6-4ff7-8abd-043d185150af", "@id": "/assays/87fbe483-31c6-4ff7-8abd-043d185150af/", "display_title": "WGS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"@type": ["Assay", "Item"], "status": "open", "uuid": "761d868f-f910-4790-a0c1-068f088b8ff7", "@id": "/assays/761d868f-f910-4790-a0c1-068f088b8ff7/", "display_title": "Ultra-Long WGS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"@type": ["Assay", "Item"], "status": "open", "uuid": "d9551013-ef50-4704-b7dd-375d468000ee", "@id": "/assays/d9551013-ef50-4704-b7dd-375d468000ee/", "display_title": "Hi-C", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"@type": ["Assay", "Item"], "status": "open", "uuid": "dec3e4cd-86cb-46cb-9ef7-62b1483c7ada", "@id": "/assays/dec3e4cd-86cb-46cb-9ef7-62b1483c7ada/", "display_title": "Fiber-seq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "analytes": [{"status": "open", "uuid": "3b93fe8e-f53d-4608-961f-fda7f03d373c", "@type": ["Analyte", "Item"], "@id": "/analytes/3b93fe8e-f53d-4608-961f-fda7f03d373c/", "display_title": "UWSC_ANALYTE_COLO-829BL_HMWGDNA_1", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"status": "open", "uuid": "2fa87ba9-811d-44eb-bb02-1c4ed82ee4dd", "@type": ["Analyte", "Item"], "@id": "/analytes/2fa87ba9-811d-44eb-bb02-1c4ed82ee4dd/", "display_title": "PS00341", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"status": "open", "uuid": "57718c8a-58cc-4339-8d32-2314f76e7457", "@type": ["Analyte", "Item"], "@id": "/analytes/57718c8a-58cc-4339-8d32-2314f76e7457/", "display_title": "PS00338", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "samples": [{"@type": ["CellCultureSample", "Sample", "Item"], "@id": "/cell-culture-samples/4ce8a6c8-fa0d-40d2-a5b1-957691ce30d0/", "display_title": "UWSC_CELL-CULTURE-SAMPLE_COLO-829BL_4", "uuid": "4ce8a6c8-fa0d-40d2-a5b1-957691ce30d0", "status": "open", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"@type": ["CellCultureSample", "Sample", "Item"], "@id": "/cell-culture-samples/7ed3cc3f-ada9-4f49-b898-b5a9c53aa0a9/", "display_title": "UWSC_CELL-CULTURE-SAMPLE_COLO-829BL_HI-C_1", "uuid": "7ed3cc3f-ada9-4f49-b898-b5a9c53aa0a9", "status": "open", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"@type": ["CellCultureSample", "Sample", "Item"], "@id": "/cell-culture-samples/87fa6309-c734-48ea-a7b9-b91873fb98ab/", "display_title": "UWSC_CELL-CULTURE-SAMPLE_COLO-829BL_2", "uuid": "87fa6309-c734-48ea-a7b9-b91873fb98ab", "status": "open", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "sample_sources": [{"status": "open", "@id": "/cell-cultures/8d7e3b2d-5086-4787-aa9d-91cbd13fbbea/", "display_title": "UWSC_CELL-CULTURE_COLO-829BL_1", "@type": ["CellCulture", "SampleSource", "Item"], "uuid": "8d7e3b2d-5086-4787-aa9d-91cbd13fbbea", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "donors": [{"external_id": "COLO829", "sex": "Male", "@id": "/donors/a4f69010-3d74-48de-b071-57ef2cadb77b/", "uuid": "a4f69010-3d74-48de-b071-57ef2cadb77b", "age": 45, "@type": ["Donor", "AbstractDonor", "Item"], "display_title": "COLO829", "status": "open", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "file_summary": {"annotated_name": "SMHTCOLO829BL-X-X-M45-XX-uwsc-SMASF32B11M2-GRCh38ToDSA.chain", "access_status": "Open", "file_format": "chain", "file_size": 11293923, "md5sum": "35409417dd00fbc74f52f36c4972e319", "consortia": ["SMaHT"], "uuid": "1955da2d-1626-491c-ac11-ffcbf0c9f566"}, "data_generation_summary": {"data_category": ["Reference Conversion"], "data_type": ["Chain File"], "sequencing_center": "UWSC GCC", "submission_centers": ["UWSC GCC"], "assays": ["WGS", "Ultra-Long WGS", "Hi-C", "Fiber-seq"], "sequencing_platforms": ["ONT PromethION 24", "Illumina NovaSeq 6000", "PacBio Revio"], "target_group_coverage": [40, 100, 80, 60, 150.0]}, "sample_summary": {"donor_ids": ["COLO829"], "sample_names": ["SMHTCOLO829BL"], "sample_descriptions": ["COLO829BL"], "studies": ["Benchmarking"], "analytes": ["DNA"]}, "analysis_summary": {"software": ["minimap2 (2.28)", "paf2chain (0.1.0)"]}, "release_tracker_description": "DSA chain", "release_tracker_title": "COLO829BL", "@context": "/terms/", "aggregated-items": {}, "validation-errors": []}